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semantic resources
PHYTOTRAITS
Phytoplankton Traits Thesaurus (PHYTOTRAITS)
SKOS
No license
Last submission date September 13, 2023

General information

The Phytoplankton Traits Thesaurus is the first initiative to deal with the semantics of phytoplankton functional traits focusing on morpho-functional traits. It has been developed and published by LifeWatch Italy, the Italian node of the e-science European infrastructure for biodiversity and ecosystem research (LifeWatch ERIC). PhytoTraits reflects the agreement of a scientific expert community to fix semantic properties (e.g. label, definition) of approximately 120 traits.
Initial created on March 6, 2015. For additional information, contact Elena Stanca (elena.stanca@unisalento.it) and Ilaria Rosati (ilaria.rosati@cnr.it).


Metrics

FAIR score
Beta

We could not collect the data from the fairness service

Semantic resource relations network

View of (bpm:viewOf) ×
Imports(omv:useImports) ×
Has equivalences with(door:isAlignedTo) ×
Generally related to or relies on(door:ontologyRelatedTo) ×
Backward compatible(omv:isBackwardCompatibleWith) ×
Incompatible(omv:isIncompatibleWith) ×
Comes from the same domain(door:comesFromTheSameDomain) ×
Similar to(door:similarTo) ×
Specializes(door:explanationEvolution) ×
Generalizes(voaf:generalizes) ×
Disparate modelling with(door:hasDisparateModelling) ×
Has part (has views)(dct:hasPart) ×
Used by(voaf:usedBy) ×
Translation(schema:workTranslation) ×
Translation of(schema:translationOfWork) ×

Submissions

Version
Modified Submitted
Actions

1.5

September 13, 2023

1.0

May 26, 2019

Identifiers

URI

https://kos.lifewatch.eu/thesauri/phytotraits/
https://kos.lifewatch.eu/thesauri/phytotraits/
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EcoPortal URI

http://ecoportal.lifewatch.eu/ontologies/PHYTOTRAITS
http://ecoportal.lifewatch.eu/ontologies/PHYTOTRAITS
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DOI

https://doi.org/10.48373/wghj-b028
https://doi.org/10.48373/wghj-b028

Visits

Views of PHYTOTRAITS

No views available for PHYTOTRAITS.

ID https://kos.lifewatch.eu/thesauri/phytotraits/c_4
https://kos.lifewatch.eu/thesauri/phytotraits/c_4
http://ecoportal.lifewatch.eu/ontologies/PHYTOTRAITS/c_4
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Preferred name

Trait

Definitions
Any measurable or observable characteristic of an organism.
In schemes
Type http://www.w3.org/2004/02/skos/core#Concept
Subject Author Type Created
No notes to display
Add PHYTOTRAITS Web Widgets to your site
Jump To

Type a class name from PHYTOTRAITS and jump to it in EcoPortal

  • Download the quick_jump.js file and put it on your server.
  • Copy the code below and paste it to your HTML page
  • Note: If you would like to use Quick Jump across multiple semantic resources
    • You can enter a comma-separated list of semantic resource ids
      var BP_ontology_id = "NCIt,SNOMEDCT";
    • You can set the variable to 'all' to search all semantic resources in EcoPortal:
      var BP_ontology_id = "all";
  • To include definitions in the Jump To drop-down, add the following variable in Javascript:
    var BP_include_definitions = true;
  • In the code that you just pasted, make sure to change the path to the quick_jump.js file to point to the location where you put the file (relative to your HTML file)
    • For example, if you put the quick_jump.js file in the same directory as your HTML file, this is the code you would use:
      <div id="bp_quick_jump"></div>
                  <script type="text/javascript">
                      var BP_ontology_id = "PHYTOTRAITS";</script>
                  <script src="quick_jump.js" type="text/javascript" charset="utf-8"></script>
      

For more help visit NCBO Widget Wiki


Autocomplete

Fill your form fields with classes from PHYTOTRAITS

Example 1 (start typing the class name to get its full URI)

Example 2 (get the ID for a class)

Example 3 (get the preferred name for a class)

  • Download the form_complete.js file and put it on your server.
  • In the header for the page where you want the form field, include the form_complete.js In the header for the page where you want the form field, include the
  • On your form, for the fields where you want to use the class-selection widget, specify the field's class in the following format: bp_form_complete-{ontology_id_list}-{value}
    • For example, bp_form_complete-NCIT-uri will use NCI Thesaurus (semantic resource id is NCIT) and will put the class URI in the field after the user selects the class from the pull-down list.
      • Note: In addition to single semantic resource ids, you can use a list:
        bp_form_complete-NCIT,NCBITAXON-uri
      • OR use 'all' to search across all EcoPortal semantic resources:
        bp_form_complete-all-uri
      • The autocomplete widget accesses semantic resource content from the latest version of the semantic resource.
    • You can use the following parameters to select which value will be placed into the user-visible input field:
  • In addition to the input element you defined, there are four hidden form elements that are created and then set when a user selects a class from the list. For example, if you create a field with this code:
      <input type="text" name="a" class="bp_form_complete-all-uri" size="100"/>
    The 'name' attribute is used to create the four following fields (note how the 'a' from the name attribute is appended to the id attribute):
    • <input type="hidden" id="a_bioportal_preferred_name">
    • <input type="hidden" id="a_bioportal_concept_id">
    • <input type="hidden" id="a_bioportal_ontology_id">
    • <input type="hidden" id="a_bioportal_full_id">
    • Additional parameters are documented on the NCBO Widget Wiki

    For more help visit NCBO Widget Wiki


    Visualization

    Display a visualization for a given class in PHYTOTRAITS

    Copy the code below and paste it to your HTML page

    <iframe frameborder="0" src="/widgets/visualization?ontology=PHYTOTRAITS&class=https%3A%2F%2Fkos.lifewatch.eu%2Fthesauri%2Fphytotraits%2Fc_22&apikey=YOUR_API_KEY"></iframe>
    

    For more help visit NCBO Widget Wiki


    Tree Widget

    Display a class tree with a search field for PHYTOTRAITS

    Copy the code below and paste it to your HTML page

    <link rel="stylesheet" type="text/css" href="/widgets/jquery.ncbo.tree.css">
      <script src="/widgets/jquery.ncbo.tree-2.0.2.js"></script>
      <div id="widget_tree"></div>
      var widget_tree = $("#widget_tree").NCBOTree({
        apikey: "YOUR_API_KEY",
        ontology: "PHYTOTRAITS"
      });
    
    

    You can also view a detailed demonstration

    For more help visit NCBO Widget Wiki